Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-74/megassr/results/hub_GCF_025536035.1/fasta/hub_GCF_025536035.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              97
Total size of examined sequences (bp):           4645717
Total number of identified SSRs:                 29
Number of SSR containing sequences:              11
Number of sequences containing more than 1 SSR:  8
Number of SSRs present in compound formation:    2


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	4
2	8
3	6
4	1
5	2
6	8

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	total
A	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1						1
G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-		1	1			1	3
CG	-	-	-	5																				5
GC	-	-	-	3																				3
CAG	-	-	1																					1
CGG	-	-	3																					3
GGC	-	-	2																					2
GCTG	-	1																						1
GCGCT	1																							1
TCTTC		1																						1
CAGACG	1																							1
CATGAC		1																						1
CTGCTA												1												1
GAAGCT		1																						1
GAAGTC	1																							1
GCCAGC	1																							1
GCTGGC	1																							1
TCAGGC		1																						1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	total
A/T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1						1
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-		1	1			1	3
CG/CG	-	-	-	8																				8
AGC/CTG	-	-	1																					1
CCG/CGG	-	-	5																					5
AGCC/CTGG	-	1																						1
AAGAG/CTCTT		1																						1
AGCGC/CGCTG	1																							1
AAGCTG/AGCTTC		1																						1
AAGTCG/ACTTCG	1																							1
ACCATG/ATGGTC		1																						1
ACGCAG/CGTCTG	1																							1
ACTGCT/AGCAGT												1												1
AGCCTG/AGGCTC		1																						1
AGCGCC/CGCTGG	2																							2
