Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-75/megassr/results/hub_GCF_025536015.1/fasta/hub_GCF_025536015.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              86
Total size of examined sequences (bp):           4766488
Total number of identified SSRs:                 24
Number of SSR containing sequences:              18
Number of sequences containing more than 1 SSR:  4
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	7
3	9
5	1
6	7

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	total
CG	-	-	-	3	3
GC	-	-	-	4	4
CAG	-	-	1		1
CGC	-	-	1		1
CGG	-	-	1		1
CTG	-	-	1		1
GCT	-	-	1		1
GGC	-	-	2		2
GTG	-	-	1		1
TCG	-	-	1		1
TGGCG	1				1
ACAATC				1	1
CCGCGG	1				1
CGACTT	1				1
CTGGCG	1				1
GCCAGC	1				1
GCGTCT	1				1
TCAGGC	1				1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	total
CG/CG	-	-	-	7	7
ACC/GGT	-	-	1		1
ACG/CGT	-	-	1		1
AGC/CTG	-	-	3		3
CCG/CGG	-	-	4		4
ACGCC/CGTGG	1				1
AAGTCG/ACTTCG	1				1
AATCAC/ATTGTG				1	1
ACGCAG/CGTCTG	1				1
AGCCTG/AGGCTC	1				1
AGCGCC/CGCTGG	2				2
CCGCGG/CCGCGG	1				1
