Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-68/megassr/results/hub_GCF_025535995.1/fasta/hub_GCF_025535995.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              260
Total size of examined sequences (bp):           5111897
Total number of identified SSRs:                 28
Number of SSR containing sequences:              26
Number of sequences containing more than 1 SSR:  2
Number of SSRs present in compound formation:    1


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	2
2	5
3	8
5	2
6	11

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	total
C	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-							1	1
T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-		1						1
CG	-	-	-	2	1																				3
GC	-	-	-	1	1																				2
CAG	-	-	1																						1
CCG	-	-	2																						2
CGG	-	-	2																						2
GCG	-	-	1																						1
GGC	-	-	1																						1
TGG	-	-	1																						1
AGCCC	1																								1
GCGCG	1																								1
AAGGTG			1																						1
AAGGTT	1																								1
CCTGCG	1																								1
CGACTT	1																								1
CGGCGC	1																								1
GCAGAT		1																							1
GCCAGC	1																								1
GCCCCG	1																								1
GGGTTA		1																							1
TTAACA		1																							1
TTGGGT	1																								1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	total
A/T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-		1						1
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-							1	1
CG/CG	-	-	-	3	2																				5
ACC/GGT	-	-	1																						1
AGC/CTG	-	-	1																						1
CCG/CGG	-	-	6																						6
AGCCC/CTGGG	1																								1
CCGCG/CGCGG	1																								1
AAACCC/GGGTTT	1																								1
AACATT/AATGTT		1																							1
AACCCT/AGGGTT		1																							1
AACCTT/AAGGTT	1																								1
AAGGTG/ACCTTC			1																						1
AAGTCG/ACTTCG	1																								1
AGATGC/ATCTGC		1																							1
AGCGCC/CGCTGG	1																								1
AGGCGC/CCTGCG	1																								1
CCCCGG/CCGGGG	1																								1
CCGGCG/CCGGCG	1																								1
