Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-73/megassr/results/hub_GCF_025535975.1/fasta/hub_GCF_025535975.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              80
Total size of examined sequences (bp):           4738183
Total number of identified SSRs:                 27
Number of SSR containing sequences:              12
Number of sequences containing more than 1 SSR:  6
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	8
3	9
5	2
6	8

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	total
AT	-	-	-	1	1
CG	-	-	-	3	3
GC	-	-	-	4	4
CAG	-	-	1		1
CCG	-	-	1		1
CTG	-	-	1		1
GCG	-	-	1		1
GCT	-	-	1		1
GGC	-	-	2		2
GTG	-	-	1		1
TCG	-	-	1		1
GCGCT	1				1
TGGCG	1				1
AGCCTG	1				1
AGCGCC	1				1
AGGAGC	1				1
CAGACG	1				1
CCATCG	1				1
CCGCGG	1				1
CGACTT	1				1
GCCAGC	1				1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	total
AT/AT	-	-	-	1	1
CG/CG	-	-	-	7	7
ACC/GGT	-	-	1		1
ACG/CGT	-	-	1		1
AGC/CTG	-	-	3		3
CCG/CGG	-	-	4		4
ACGCC/CGTGG	1				1
AGCGC/CGCTG	1				1
AAGTCG/ACTTCG	1				1
ACGCAG/CGTCTG	1				1
AGCAGG/CCTGCT	1				1
AGCCTG/AGGCTC	1				1
AGCGCC/CGCTGG	2				2
ATCGCC/ATGGCG	1				1
CCGCGG/CCGCGG	1				1
