Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-74/megassr/results/hub_GCF_025535935.1/fasta/hub_GCF_025535935.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              161
Total size of examined sequences (bp):           5012298
Total number of identified SSRs:                 23
Number of SSR containing sequences:              16
Number of sequences containing more than 1 SSR:  5
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	1
2	5
3	9
4	1
5	2
6	5

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	total
A	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-																																				1	1
CG	-	-	-	3	1																																																	4
GC	-	-	-	1																																																		1
ACG	-	-		1																																																		1
ATC	-	-	1																																																			1
CCG	-	-	1																																																			1
CGG	-	-	1																																																			1
GCC	-	-	1																																																			1
GGC	-	-	1																																																			1
TCA	-	-	1																																																			1
TGA	-	-	1																																																			1
TGC	-	-	1																																																			1
CAAC	-								1																																													1
CAGCG	1																																																					1
TGGCG	1																																																					1
CGACTT	1																																																					1
CGCCAG	1																																																					1
CTGCTT					1																																																	1
GCTGGC	1																																																					1
GTTGAA	1																																																					1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	total
A/T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-																																				1	1
CG/CG	-	-	-	4	1																																																	5
ACG/CGT	-	-		1																																																		1
AGC/CTG	-	-	1																																																			1
ATC/ATG	-	-	3																																																			3
CCG/CGG	-	-	4																																																			4
AACC/GGTT	-								1																																													1
ACGCC/CGTGG	1																																																					1
AGCGC/CGCTG	1																																																					1
AACTTC/AAGTTG	1																																																					1
AAGCAG/CTGCTT					1																																																	1
AAGTCG/ACTTCG	1																																																					1
AGCGCC/CGCTGG	2																																																					2
