Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-73/megassr/results/hub_GCF_025535905.1/fasta/hub_GCF_025535905.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              118
Total size of examined sequences (bp):           4852323
Total number of identified SSRs:                 29
Number of SSR containing sequences:              17
Number of sequences containing more than 1 SSR:  6
Number of SSRs present in compound formation:    4


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	5
2	7
3	8
5	5
6	4

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	total
G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1	1	2					1	5
CG	-	-	-	1		1																				2
GC	-	-	-	3																						3
TA	-	-	-	1																						1
TC	-	-	-	1																						1
CAG	-	-	1																							1
CGC	-	-	1																							1
CGG	-	-	1																							1
CTG	-	-	2																							2
GGT	-	-	1																							1
TGA	-	-		1																						1
TGG	-	-	1																							1
AATTT						1																				1
CACGC										1																1
CGGCG	1																									1
GCCGG	1																									1
GCGCG	1																									1
AGCGCC	1																									1
GAAGTC	1																									1
GCGATG	1																									1
GCTGGC	1																									1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	total
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1	1	2					1	5
AG/CT	-	-	-	1																						1
AT/AT	-	-	-	1																						1
CG/CG	-	-	-	4		1																				5
ACC/GGT	-	-	2																							2
AGC/CTG	-	-	3																							3
ATC/ATG	-	-		1																						1
CCG/CGG	-	-	2																							2
AAATT/AATTT						1																				1
ACGCC/CGTGG										1																1
CCCGG/CCGGG	1																									1
CCGCG/CGCGG	2																									2
AAGTCG/ACTTCG	1																									1
AGCGCC/CGCTGG	2																									2
ATCGCC/ATGGCG	1																									1
