Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-71/megassr/results/hub_GCF_025535875.1/fasta/hub_GCF_025535875.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              158
Total size of examined sequences (bp):           4741671
Total number of identified SSRs:                 26
Number of SSR containing sequences:              17
Number of sequences containing more than 1 SSR:  6
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	3
3	7
4	1
5	7
6	8

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	total
CG	-	-	-	1							1
GC	-	-	-	1							1
TC	-	-	-	1							1
CAG	-	-	1								1
CCG	-	-	2								2
CCT	-	-	1								1
CGG	-	-	1								1
GCA	-	-	1								1
TTC	-	-	1								1
CCTC	-	1									1
CAGCG	1										1
CCACG										1	1
CCTCT	1										1
CGACG	1										1
CGCGC	2										2
GCGCC	1										1
CAGGCG	1										1
CATGAC	1										1
CCATCG	1										1
CCCTCT	1										1
CGACTT	1										1
GCCAGC	1										1
GCTGGC	2										2

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	total
AG/CT	-	-	-	1							1
CG/CG	-	-	-	2							2
AAG/CTT	-	-	1								1
AGC/CTG	-	-	2								2
AGG/CCT	-	-	1								1
CCG/CGG	-	-	3								3
AGGG/CCCT	-	1									1
ACGCC/CGTGG										1	1
ACGCG/CGCGT	1										1
AGAGG/CCTCT	1										1
AGCGC/CGCTG	1										1
CCGCG/CGCGG	3										3
AAGTCG/ACTTCG	1										1
ACCATG/ATGGTC	1										1
AGAGGG/CCCTCT	1										1
AGCGCC/CGCTGG	3										3
AGGCGC/CCTGCG	1										1
ATCGCC/ATGGCG	1										1
