Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-70/megassr/results/hub_GCF_025535845.1/fasta/hub_GCF_025535845.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              116
Total size of examined sequences (bp):           4751384
Total number of identified SSRs:                 28
Number of SSR containing sequences:              14
Number of sequences containing more than 1 SSR:  7
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	1
2	8
3	9
5	2
6	8

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	total
T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-		1	1
AT	-	-	-	1																1
CG	-	-	-	4																4
GC	-	-	-	3																3
CAG	-	-	2																	2
CCA	-	-	1																	1
CGC	-	-	1																	1
CGG	-	-	1																	1
GCT	-	-	1																	1
GGC	-	-	2																	2
TCG	-	-	1																	1
CGCCA	1																			1
GCGCT	1																			1
AGCCTG	1																			1
AGGAGC	1																			1
CCATCG	1																			1
CCGCGG	1																			1
CGACTT	1																			1
CTGGCG	1																			1
GCCAGC	1																			1
GCGTCT	1																			1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	total
A/T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-		1	1
AT/AT	-	-	-	1																1
CG/CG	-	-	-	7																7
ACC/GGT	-	-	1																	1
ACG/CGT	-	-	1																	1
AGC/CTG	-	-	3																	3
CCG/CGG	-	-	4																	4
ACGCC/CGTGG	1																			1
AGCGC/CGCTG	1																			1
AAGTCG/ACTTCG	1																			1
ACGCAG/CGTCTG	1																			1
AGCAGG/CCTGCT	1																			1
AGCCTG/AGGCTC	1																			1
AGCGCC/CGCTGG	2																			2
ATCGCC/ATGGCG	1																			1
CCGCGG/CCGCGG	1																			1
