Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-67/megassr/results/hub_GCF_025535715.1/fasta/hub_GCF_025535715.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              1149
Total size of examined sequences (bp):           5268692
Total number of identified SSRs:                 33
Number of SSR containing sequences:              16
Number of sequences containing more than 1 SSR:  10
Number of SSRs present in compound formation:    3


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	4
2	10
3	10
5	2
6	7

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	total
G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	2			1	1	4
AT	-	-	-	1																			1
CG	-	-	-	4																			4
CT	-	-	-		1																		1
GC	-	-	-	3																			3
TA	-	-	-		1																		1
CAG	-	-	1																				1
CCA	-	-	1																				1
CGG	-	-	1																				1
CTG	-	-	1																				1
CTT	-	-	1																				1
GCG	-	-	1																				1
GCT	-	-	1																				1
GGC	-	-	2																				2
TCG	-	-	1																				1
TGGCG	1																						1
TTCCT	1																						1
CCTGAG				1																			1
CCTGGT		1																					1
CGACTT	1																						1
CTGGCG	1																						1
GCTCCT	1																						1
GCTGGC	1																						1
TTGCGA	1																						1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	total
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	2			1	1	4
AG/CT	-	-	-		1																		1
AT/AT	-	-	-	1	1																		2
CG/CG	-	-	-	7																			7
AAG/CTT	-	-	1																				1
ACC/GGT	-	-	1																				1
ACG/CGT	-	-	1																				1
AGC/CTG	-	-	3																				3
CCG/CGG	-	-	4																				4
AAAGG/CCTTT	1																						1
ACGCC/CGTGG	1																						1
AAGTCG/ACTTCG	1																						1
AATCGC/ATTGCG	1																						1
ACCAGG/CCTGGT		1																					1
AGCAGG/CCTGCT	1																						1
AGCCTG/AGGCTC				1																			1
AGCGCC/CGCTGG	2																						2
