Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-71/megassr/results/hub_GCF_025535695.1/fasta/hub_GCF_025535695.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              84
Total size of examined sequences (bp):           4801560
Total number of identified SSRs:                 27
Number of SSR containing sequences:              16
Number of sequences containing more than 1 SSR:  5
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	7
3	9
5	3
6	8

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	total
AT	-	-	-	2		2
CG	-	-	-	3		3
GC	-	-	-	2		2
CAG	-	-	2			2
CCA	-	-	1			1
CCG	-	-	2			2
CTG	-	-	1			1
GCG	-	-	1			1
GGC	-	-	1			1
TCG	-	-	1			1
AAGAA	1					1
CAATA	1					1
TTCTA	1					1
AGCGCC	1					1
CCATCG	1					1
CGACTT	1					1
GCCGCG	1					1
GCGTCT	1					1
GCTGGC	1					1
TCAGGC		1				1
TTCCTG					1	1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	total
AT/AT	-	-	-	2		2
CG/CG	-	-	-	5		5
ACC/GGT	-	-	1			1
ACG/CGT	-	-	1			1
AGC/CTG	-	-	3			3
CCG/CGG	-	-	4			4
AAAAG/CTTTT	1					1
AATAC/ATTGT	1					1
AATAG/ATTCT	1					1
AACAGG/CCTGTT					1	1
AAGTCG/ACTTCG	1					1
ACGCAG/CGTCTG	1					1
AGCCTG/AGGCTC		1				1
AGCGCC/CGCTGG	2					2
ATCGCC/ATGGCG	1					1
CCGCGG/CCGCGG	1					1
