Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-66/megassr/results/hub_GCF_025535675.1/fasta/hub_GCF_025535675.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              133
Total size of examined sequences (bp):           4703283
Total number of identified SSRs:                 22
Number of SSR containing sequences:              11
Number of sequences containing more than 1 SSR:  6
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	4
3	5
5	5
6	8

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	total
AT	-	-	-	1			1
CG	-	-	-	2			2
GC	-	-	-	1			1
CGG	-	-	2				2
CTG	-	-	1				1
GCA	-	-			1		1
GCT	-	-	1				1
CAGCG	1						1
CGCGC	1						1
CTGGC	1						1
GCGCG	1						1
GGCGC	1						1
AGCTGA	1						1
CAACAG						1	1
GAAGTC	1						1
GAATGG	1						1
GCCAGC	2						2
GCGATG	1						1
GCGCCA	1						1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	total
AT/AT	-	-	-	1			1
CG/CG	-	-	-	3			3
AGC/CTG	-	-	2		1		3
CCG/CGG	-	-	2				2
AGCGC/CGCTG	1						1
AGGCC/CCTGG	1						1
CCGCG/CGCGG	3						3
AACAGC/CTGTTG						1	1
AAGCTG/AGCTTC	1						1
AAGTCG/ACTTCG	1						1
AATGGG/ATTCCC	1						1
AGCGCC/CGCTGG	3						3
ATCGCC/ATGGCG	1						1
