Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-70/megassr/results/hub_GCF_025535535.1/fasta/hub_GCF_025535535.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              163
Total size of examined sequences (bp):           4816317
Total number of identified SSRs:                 16
Number of SSR containing sequences:              13
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	1
3	5
4	1
5	5
6	4

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	total
CG	-	-	-			1						1
CAG	-	-	1									1
CGG	-	-	1									1
CTG	-	-	2									2
GCT	-	-		1								1
GCTG	-	1										1
CAAAA											1	1
CAGGA	1											1
CTGCC	1											1
GGCGC	1											1
TCTCT		1										1
CGACTT	1											1
GCGCCA	1											1
GCGTCT	1											1
TGGTCA		1										1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	total
CG/CG	-	-	-			1						1
AGC/CTG	-	-	3	1								4
CCG/CGG	-	-	1									1
AGCC/CTGG	-	1										1
AAAAC/GTTTT											1	1
AAGAG/CTCTT		1										1
ACAGG/CCTGT	1											1
AGGGC/CCCTG	1											1
CCGCG/CGCGG	1											1
AAGTCG/ACTTCG	1											1
ACCATG/ATGGTC		1										1
ACGCAG/CGTCTG	1											1
AGCGCC/CGCTGG	1											1
