Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-65/megassr/results/hub_GCF_025535525.1/fasta/hub_GCF_025535525.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              494
Total size of examined sequences (bp):           4712978
Total number of identified SSRs:                 22
Number of SSR containing sequences:              20
Number of sequences containing more than 1 SSR:  2
Number of SSRs present in compound formation:    1


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	2
2	2
3	9
5	4
6	5

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	total
C	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-			1										1	2
CG	-	-	-	2																											2
ACG	-	-	1																												1
AGC	-	-	1																												1
CCG	-	-	2																												2
CGC	-	-	1	1																											2
CTG	-	-	1																												1
GGC	-	-	2																												2
ACGTC	1																														1
CACGC	1																														1
GCGCG	1																														1
TTGTT	1																														1
CCCTAT			1																												1
CGCCAG	1																														1
GAAGTC	1																														1
GCGCCA	1																														1
GTGATA					1																										1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	total
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-			1										1	2
CG/CG	-	-	-	2																											2
ACG/CGT	-	-	1																												1
AGC/CTG	-	-	2																												2
CCG/CGG	-	-	5	1																											6
AAAAC/GTTTT	1																														1
ACGCC/CGTGG	1																														1
ACGTC/ACGTG	1																														1
CCGCG/CGCGG	1																														1
AAGTCG/ACTTCG	1																														1
ACTATC/AGTGAT					1																										1
AGCGCC/CGCTGG	2																														2
AGGGAT/ATCCCT			1																												1
