Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-69/megassr/results/hub_GCF_025535515.1/fasta/hub_GCF_025535515.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              529
Total size of examined sequences (bp):           4871096
Total number of identified SSRs:                 19
Number of SSR containing sequences:              10
Number of sequences containing more than 1 SSR:  6
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	7
3	3
4	1
5	1
6	7

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	total
CG	-	-	-	3	3
GC	-	-	-	4	4
CCG	-	-	1		1
CGG	-	-	1		1
CTG	-	-	1		1
CCAG	-	1			1
GCCGG	1				1
AGCGCC	1				1
CCGGCA	1				1
GAAGTC	1				1
GCCAGC	1				1
GCGATG	1				1
GTTAAC	1				1
TGGTCA		1			1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	total
CG/CG	-	-	-	7	7
AGC/CTG	-	-	1		1
CCG/CGG	-	-	2		2
AGCC/CTGG	-	1			1
CCCGG/CCGGG	1				1
AACGTT/AACGTT	1				1
AAGTCG/ACTTCG	1				1
ACCATG/ATGGTC		1			1
ACCGGC/CCGGTG	1				1
AGCGCC/CGCTGG	2				2
ATCGCC/ATGGCG	1				1
