Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-64/megassr/results/hub_GCF_025535395.1/fasta/hub_GCF_025535395.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              176
Total size of examined sequences (bp):           4863530
Total number of identified SSRs:                 36
Number of SSR containing sequences:              13
Number of sequences containing more than 1 SSR:  9
Number of SSRs present in compound formation:    4


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	7
2	5
3	8
5	8
6	8

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	total
C	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-		1									1				2
G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-						1	1	1	1					1	5
GC	-	-	-	4																												4
GT	-	-	-	1																												1
CCG	-	-	4	1																												5
CTG	-	-	1																													1
GCT	-	-	1																													1
TGA	-	-		1																												1
CGCGC	1																															1
CGGGG	1																															1
CGTCG	1																															1
CTGGC	1																															1
GCCAC									1																							1
GCGCA	1																															1
GCGCC	1																															1
GCGCG	1																															1
AAACTG		1																														1
CCATCG	1																															1
CGCCTG	1																															1
GAAGTC	1																															1
GCCAGC	1																															1
GCTGGC	2																															2
GTTTCT	1																															1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	total
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-		1				1	1	1	1		1			1	7
AC/GT	-	-	-	1																												1
CG/CG	-	-	-	4																												4
AGC/CTG	-	-	2																													2
ATC/ATG	-	-		1																												1
CCG/CGG	-	-	4	1																												5
ACGCC/CGTGG									1																							1
ACGCG/CGCGT	1																															1
AGCGC/CGCTG	1																															1
AGGCC/CCTGG	1																															1
CCCCG/CGGGG	1																															1
CCGCG/CGCGG	3																															3
AAACAG/CTGTTT	1																															1
AAACTG/AGTTTC		1																														1
AAGTCG/ACTTCG	1																															1
AGCGCC/CGCTGG	3																															3
AGGCGC/CCTGCG	1																															1
ATCGCC/ATGGCG	1																															1
