Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-63/megassr/results/hub_GCF_025535375.1/fasta/hub_GCF_025535375.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              392
Total size of examined sequences (bp):           4881265
Total number of identified SSRs:                 25
Number of SSR containing sequences:              10
Number of sequences containing more than 1 SSR:  6
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	8
3	8
4	1
5	1
6	7

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	total
CG	-	-	-	4					4
GC	-	-	-	4					4
CAG	-	-	2						2
CCA	-	-	1						1
CCG	-	-	1						1
GCG	-	-	1						1
GGC	-	-	2						2
TCG	-	-	1						1
GATA	-	1							1
CGCCA	1								1
AGCCTG	1								1
AGCGCC	1								1
CAGACG	1								1
GAAGTC	1								1
GCCAGC	1								1
GGCTCA			1						1
TCTTTT								1	1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	total
CG/CG	-	-	-	8					8
ACC/GGT	-	-	1						1
ACG/CGT	-	-	1						1
AGC/CTG	-	-	2						2
CCG/CGG	-	-	4						4
AGAT/ATCT	-	1							1
ACGCC/CGTGG	1								1
AAAAAG/CTTTTT								1	1
AAGTCG/ACTTCG	1								1
ACGCAG/CGTCTG	1								1
AGCCTG/AGGCTC	1		1						2
AGCGCC/CGCTGG	2								2
