Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-67/megassr/results/hub_GCF_025452135.1/fasta/hub_GCF_025452135.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              1
Total size of examined sequences (bp):           6264404
Total number of identified SSRs:                 44
Number of SSR containing sequences:              1
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	1
3	8
5	12
6	23

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	total
GC	-	-	-	1									1
CAC	-	-	1										1
CCG	-	-	2										2
CGC	-	-	2										2
CGG	-	-	1										1
GGT	-	-	1										1
GTG	-	-										1	1
AGAGC		1											1
CCAGG		1											1
CGCCG	3												3
CGCGC	1												1
CGGCG	2												2
CTCGC	1												1
GCCGT	1												1
GCGCC	1												1
GCGGC	1												1
ACAGCG	1												1
AGGGCG	1												1
ATGGCC	1												1
CACGAA			1										1
CCAGCG	2												2
CCAGGG	1												1
CCGAGC			1			1							2
CCGAGG	1												1
CCTGAC	1												1
CCTGGG	1												1
CGCCGA	1												1
CGCTGG	1												1
CGTGAT			1										1
GCCGGG	1												1
GCGCCG	1												1
GCGCCT		1											1
GGCCTT	1												1
GTCACG	1												1
GTTGGC									1				1
TGGCTG									1				1
TGTTCC	1												1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	total
CG/CG	-	-	-	1									1
ACC/GGT	-	-	2									1	3
CCG/CGG	-	-	5										5
ACGGC/CCGTG	1												1
AGAGC/CTCTG		1											1
AGGCC/CCTGG		1											1
AGGCG/CCTCG	1												1
CCGCG/CGCGG	8												8
AACACG/CGTGTT			1										1
AACAGG/CCTGTT	1												1
AACGCC/CGTTGG									1				1
AAGGCC/CCTTGG	1												1
ACAGCC/CTGTGG									1				1
ACAGCG/CGCTGT	1												1
ACCCTG/AGGGTC	1												1
ACCGTG/ACGGTC	1												1
ACGATC/ATCGTG			1										1
ACGCCG/CGGCGT	1												1
AGCCCG/CGGGCT			1			1							2
AGCGCC/CGCTGG	3												3
AGGCCC/CCTGGG	1												1
AGGCCG/CCTCGG	1												1
AGGCGC/CCTGCG		1											1
AGGGCC/CCCTGG	1												1
AGGGCG/CCCTCG	1												1
ATGGCC/ATGGCC	1												1
CCCCGG/CCGGGG	1												1
CCGGCG/CCGGCG	1												1
