Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-65/megassr/results/hub_GCF_025447595.1/fasta/hub_GCF_025447595.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              65
Total size of examined sequences (bp):           6288165
Total number of identified SSRs:                 27
Number of SSR containing sequences:              18
Number of sequences containing more than 1 SSR:  7
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	1
3	3
5	2
6	21

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	total
AT	-	-	-		1				1
CAC	-	-		1					1
CGG	-	-		1					1
GGT	-	-	1						1
GATCT	1								1
GCCGC	1								1
AGCCAG				1					1
ATCCCG	2								2
CAGGTC	1								1
CCACCG	1								1
CCAGGC	1								1
CCCAAT		1							1
CCTGCA								1	1
CGCCGT	1								1
CGGTGG	1								1
CTGGTG	1								1
GCAGGT	1								1
GCCCAG	1								1
GCGCAT		1							1
GCGCCA	1								1
GCTCTG		1							1
GCTGGA		1							1
GGCCTG	1								1
GGTGCG	1								1
TCATGC	1								1
TGGCTC	1								1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	total
AT/AT	-	-	-		1				1
ACC/GGT	-	-	1	1					2
CCG/CGG	-	-		1					1
AGATC/ATCTG	1								1
CCGCG/CGCGG	1								1
AATCCC/ATTGGG		1							1
ACCAGC/CTGGTG	1								1
ACCCGC/CGGGTG	1								1
ACCGCC/CGGTGG	2								2
ACCTGC/AGGTGC	1							1	2
ACCTGG/AGGTCC	1								1
ACGGCG/CCGTCG	1								1
AGAGCC/CTCTGG	1	1		1					3
AGCATG/ATGCTC	1								1
AGCGCC/CGCTGG	1								1
AGCTCC/AGCTGG		1							1
AGGCCC/CCTGGG	3								3
ATCCCG/ATCGGG	2								2
ATGCGC/ATGCGC		1							1
