Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-64/megassr/results/hub_GCF_025447555.1/fasta/hub_GCF_025447555.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              41
Total size of examined sequences (bp):           6384439
Total number of identified SSRs:                 21
Number of SSR containing sequences:              13
Number of sequences containing more than 1 SSR:  7
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	2
3	3
5	4
6	12

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	total
C	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-														1	1
G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-				1											1
CAC	-	-	2																													2
GTT	-	-	1																													1
CGCCG	1																															1
CGGGC	1																															1
CTGTG	1																															1
GCCGC	1																															1
AAGCCA	1																															1
CAGCGC	1																															1
CCATCG	1																															1
CCGTTC	1																															1
CCTGCA						1																										1
CTGGTG	1																															1
GCTTTT	1																															1
GGAGCT		1																														1
GGCCTT	1																															1
GTTGGT	1																															1
TCACCG	1																															1
TGATGT											1																					1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	total
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-				1										1	2
AAC/GTT	-	-	1																													1
ACC/GGT	-	-	2																													2
ACAGC/CTGTG	1																															1
CCCGG/CCGGG	1																															1
CCGCG/CGCGG	2																															2
AAAAGC/CTTTTG	1																															1
AAAGCC/CTTTGG	1																															1
AACACC/GGTGTT	1																															1
AACATC/ATGTTG											1																					1
AACGGG/CCCGTT	1																															1
AAGGCC/CCTTGG	1																															1
ACCAGC/CTGGTG	1																															1
ACCGTC/ACGGTG	1																															1
ACCTGC/AGGTGC						1																										1
AGCGCC/CGCTGG	1																															1
AGCTCC/AGCTGG		1																														1
ATCGCC/ATGGCG	1																															1
