Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-61/megassr/results/hub_GCF_025246125.1/fasta/hub_GCF_025246125.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              34
Total size of examined sequences (bp):           4852175
Total number of identified SSRs:                 19
Number of SSR containing sequences:              7
Number of sequences containing more than 1 SSR:  5
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	5
3	6
5	1
6	7

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	total
CG	-	-	-	1	1
GC	-	-	-	4	4
AGC	-	-	1		1
CCG	-	-	1		1
CTG	-	-	2		2
GCA	-	-	1		1
TCA	-	-	1		1
GCGCA	1				1
CAGGTG	1				1
CTTCAC		1			1
GAAGTC	1				1
GCTGGC	1				1
GGCGAA	1				1
TCTTCA	1				1
TGGTCG		1			1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	total
CG/CG	-	-	-	5	5
AGC/CTG	-	-	4		4
ATC/ATG	-	-	1		1
CCG/CGG	-	-	1		1
AGCGC/CGCTG	1				1
AAGATG/ATCTTC	1				1
AAGGCG/CCTTCG	1				1
AAGGTG/ACCTTC		1			1
AAGTCG/ACTTCG	1				1
ACCACG/CGTGGT		1			1
ACCTGC/AGGTGC	1				1
AGCGCC/CGCTGG	1				1
