Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-60/megassr/results/hub_GCF_024752075.1/fasta/hub_GCF_024752075.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              1168
Total size of examined sequences (bp):           5388520
Total number of identified SSRs:                 30
Number of SSR containing sequences:              16
Number of sequences containing more than 1 SSR:  6
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	2
2	3
3	4
4	1
5	5
6	15

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	total
G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1													1	2
GC	-	-	-	1																												1
TA	-	-	-	1																												1
TC	-	-	-	1																												1
CGG	-	-	1																													1
GGC	-	-	1																													1
GTG	-	-	1																													1
TCT	-	-	1																													1
CCAA	-										1																					1
AACCC	1																															1
AGCGC	1																															1
GCAGA									1																							1
GCCCA	1																															1
GGCTG						1																										1
AACGCC		1																														1
AGAGGC											1																					1
AGATCC	1																															1
CAGACG	1																															1
CAGCCT	1																															1
CAGCGC	1																															1
CCATGA				1																												1
CGCTGG	1																															1
GCAGTT		1																														1
GCTGGC	1																															1
GCTGTT		1																														1
GTCATG				1																												1
TGCCAG				1																												1
TGGTGA	1																															1
TGTCGG		1																														1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	total
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1													1	2
AG/CT	-	-	-	1																												1
AT/AT	-	-	-	1																												1
CG/CG	-	-	-	1																												1
AAG/CTT	-	-	1																													1
ACC/GGT	-	-	1																													1
CCG/CGG	-	-	2																													2
AACC/GGTT	-										1																					1
AACCC/GGGTT	1																															1
AGAGC/CTCTG									1																							1
AGCCC/CTGGG	1					1																										2
AGCGC/CGCTG	1																															1
AACAGC/CTGTTG		1																														1
AACGCC/CGTTGG		1																														1
AACTGC/AGTTGC		1																														1
ACACCG/CGGTGT		1																														1
ACCATC/ATGGTG	1																															1
ACCATG/ATGGTC				2																												2
ACGCAG/CGTCTG	1																															1
ACTGGC/AGTGCC				1																												1
AGAGGC/CCTCTG											1																					1
AGATCC/ATCTGG	1																															1
AGCCTC/AGGCTG	1																															1
AGCGCC/CGCTGG	3																															3
