Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-59/megassr/results/hub_GCF_024741195.1/fasta/hub_GCF_024741195.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              232
Total size of examined sequences (bp):           4858862
Total number of identified SSRs:                 22
Number of SSR containing sequences:              20
Number of sequences containing more than 1 SSR:  2
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	1
2	2
3	11
5	2
6	6

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	total
C	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-																																	1	1
CG	-	-	-	2																																															2
CAG	-	-	1																																																1
CCG	-	-	1																																																1
CGC	-	-	1																																																1
CGG	-	-	1																																																1
GAC	-	-	1																																																1
GCG	-	-	2																																																2
GTG	-	-	2																																																2
TGA	-	-	1																																																1
TTG	-	-	1																																																1
GCGCC	1																																																		1
TGCCA	1																																																		1
CGCCAG	1																																																		1
CTGATC	1																																																		1
GCGCCA	1																																																		1
GCGGAG	1																																																		1
TCGCTT	1																																																		1
TGCTGG	1																																																		1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	total
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-																																	1	1
CG/CG	-	-	-	2																																															2
AAC/GTT	-	-	1																																																1
ACC/GGT	-	-	2																																																2
ACG/CGT	-	-	1																																																1
AGC/CTG	-	-	1																																																1
ATC/ATG	-	-	1																																																1
CCG/CGG	-	-	5																																																5
ATGCC/ATGGC	1																																																		1
CCGCG/CGCGG	1																																																		1
AAAGCG/CGCTTT	1																																																		1
ACCAGC/CTGGTG	1																																																		1
AGCGCC/CGCTGG	2																																																		2
AGGATC/ATCCTG	1																																																		1
AGGCGG/CCGCCT	1																																																		1
