Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-58/megassr/results/hub_GCF_024741155.1/fasta/hub_GCF_024741155.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              182
Total size of examined sequences (bp):           4232543
Total number of identified SSRs:                 37
Number of SSR containing sequences:              33
Number of sequences containing more than 1 SSR:  3
Number of SSRs present in compound formation:    1


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	8
2	3
3	10
5	3
6	13

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	total
C	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-					1											1																2		4
G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-		1								1							1																1	4
AG	-	-	-	1																																															1
CT	-	-	-	1																																															1
GT	-	-	-	1																																															1
AGC	-	-		1																																															1
CAG	-	-	2	1																																															3
CCG	-	-	1																																																1
GCC	-	-	2																																																2
GGC	-	-	1																																																1
GGT	-	-	1																																																1
TCT	-	-	1																																																1
CCGCG	1																																																		1
CTCAC	1																																																		1
TGGGG	1																																																		1
ATCGAC	1																																																		1
CAGCTC	1																																																		1
CATGAC	1																																																		1
CCAGCA			1																																																1
CCCTGG	1																																																		1
CCTGAG	1																																																		1
CTGGTG	1																																																		1
GACGAA	1																																																		1
GCTGGC	1																																																		1
GGCCAT	1																																																		1
GTTGCC	1																																																		1
TCGACA	1																																																		1
TGACCC	1																																																		1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	total
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-		1			1					1						1	1															2	1	8
AC/GT	-	-	-	1																																															1
AG/CT	-	-	-	2																																															2
AAG/CTT	-	-	1																																																1
ACC/GGT	-	-	1																																																1
AGC/CTG	-	-	2	2																																															4
CCG/CGG	-	-	4																																																4
ACCCC/GGGGT	1																																																		1
ACCTC/AGGTG	1																																																		1
CCGCG/CGCGG	1																																																		1
AACGGC/CCGTTG	1																																																		1
AAGACG/CGTCTT	1																																																		1
ACATCG/ATGTCG	2																																																		2
ACCAGC/CTGGTG	1		1																																																2
ACCATG/ATGGTC	1																																																		1
ACCCTG/AGGGTC	1																																																		1
AGCCTG/AGGCTC	1																																																		1
AGCGCC/CGCTGG	1																																																		1
AGCTCC/AGCTGG	1																																																		1
AGGGCC/CCCTGG	1																																																		1
ATGGCC/ATGGCC	1																																																		1
