Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-64/megassr/results/hub_GCF_024605655.1/fasta/hub_GCF_024605655.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              26
Total size of examined sequences (bp):           4978572
Total number of identified SSRs:                 60
Number of SSR containing sequences:              18
Number of sequences containing more than 1 SSR:  12
Number of SSRs present in compound formation:    1


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	9
3	34
5	6
6	11

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	total
CG	-	-	-	4	4
GC	-	-	-	5	5
ACG	-	-	1		1
AGC	-	-	1		1
CAC	-	-	1		1
CAG	-	-	4		4
CCG	-	-	4		4
CGC	-	-	4		4
CGG	-	-	6		6
CTG	-	-	1		1
GCA	-	-	2		2
GCC	-	-	2		2
GCG	-	-	2		2
GCT	-	-	2		2
GGC	-	-	2		2
TGC	-	-	1		1
TGG	-	-	1		1
ACAAC				1	1
CAGGT	1				1
CGCCG	2				2
CGGCG	1				1
TGCGC	1				1
ACGGCG	1				1
CAGGCG	1				1
CGCTGT	1				1
CTGCTA			1		1
GCCGGA			1		1
GCGCCA	1				1
GCTGGC		1			1
GGGCTG	1				1
TATCGA	1				1
TGCGGT			1		1
TGTCGA	1				1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	total
CG/CG	-	-	-	9	9
ACC/GGT	-	-	2		2
ACG/CGT	-	-	1		1
AGC/CTG	-	-	11		11
CCG/CGG	-	-	20		20
AACAC/GTGTT				1	1
ACCTG/AGGTC	1				1
AGCGC/CGCTG	1				1
CCGCG/CGCGG	3				3
AACCGC/CGGTTG			1		1
ACAGCG/CGCTGT	1				1
ACATCG/ATGTCG	1				1
ACGGCG/CCGTCG	1				1
ACTGCT/AGCAGT			1		1
AGCCCC/CTGGGG	1				1
AGCCGG/CCGGCT			1		1
AGCGCC/CGCTGG	1	1			2
AGGCGC/CCTGCG	1				1
ATATCG/ATATCG	1				1
