Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-63/megassr/results/hub_GCF_024531375.1/fasta/hub_GCF_024531375.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              75
Total size of examined sequences (bp):           5484330
Total number of identified SSRs:                 10
Number of SSR containing sequences:              8
Number of sequences containing more than 1 SSR:  2
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	1
3	1
5	1
6	7

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	total
GT	-	-	-	1											1
CTG	-	-	1												1
TGCGC	1														1
CCAGCT	1														1
TCTACT	1														1
TCTCTA							1								1
TCTGCT								1							1
TCTGGC								1						1	2
TGTAAA		1													1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	total
AC/GT	-	-	-	1											1
AGC/CTG	-	-	1												1
AGCGC/CGCTG	1														1
AAATGT/ACATTT		1													1
AAGCAG/CTGCTT								1							1
AAGTAG/ACTTCT	1														1
AGAGAT/ATCTCT							1								1
AGAGCC/CTCTGG								1						1	2
AGCTCC/AGCTGG	1														1
