Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-57/megassr/results/hub_GCF_024531295.1/fasta/hub_GCF_024531295.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              35
Total size of examined sequences (bp):           5078322
Total number of identified SSRs:                 16
Number of SSR containing sequences:              9
Number of sequences containing more than 1 SSR:  5
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	1
3	2
5	5
6	8

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	total
GT	-	-	-	1												1
AAT	-	-	1													1
CTG	-	-	1													1
CACAT	1															1
GTTTG							1									1
TGCGC	1															1
TTGCG	1															1
TTTGG	1															1
AATAAA		1														1
CCTGCT							1									1
GAAGAT	1															1
GTTTAG		1														1
TCTACT	1															1
TCTCTA					1											1
TCTGCT															1	1
TCTGGC								1								1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	total
AC/GT	-	-	-	1												1
AAT/ATT	-	-	1													1
AGC/CTG	-	-	1													1
AAACC/GGTTT	1						1									2
AACGC/CGTTG	1															1
ACATC/ATGTG	1															1
AGCGC/CGCTG	1															1
AAAAAT/ATTTTT		1														1
AAACCT/AGGTTT		1														1
AAGATG/ATCTTC	1															1
AAGCAG/CTGCTT															1	1
AAGTAG/ACTTCT	1															1
AGAGAT/ATCTCT					1											1
AGAGCC/CTCTGG								1								1
AGCAGG/CCTGCT							1									1
