Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-62/megassr/results/hub_GCF_024531215.1/fasta/hub_GCF_024531215.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              39
Total size of examined sequences (bp):           5223817
Total number of identified SSRs:                 13
Number of SSR containing sequences:              9
Number of sequences containing more than 1 SSR:  4
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	1
3	1
5	3
6	8

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	total
GT	-	-	-	1											1
CTG	-	-	1												1
AAAGC	1														1
TGCGC	1														1
TGGTT	1														1
CATAAA	1														1
CCTAAA	1														1
CTTCTG											1				1
GATGCA	1														1
TAGTCA				1											1
TCTACT		1													1
TCTCTA					1										1
TCTGGC														1	1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	total
AC/GT	-	-	-	1											1
AGC/CTG	-	-	1												1
AAACC/GGTTT	1														1
AAAGC/CTTTG	1														1
AGCGC/CGCTG	1														1
AAACAT/ATGTTT	1														1
AAACCT/AGGTTT	1														1
AAGCAG/CTGCTT											1				1
AAGTAG/ACTTCT		1													1
ACTATG/AGTCAT				1											1
AGAGAT/ATCTCT					1										1
AGAGCC/CTCTGG														1	1
AGATGC/ATCTGC	1														1
