Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-61/megassr/results/hub_GCF_024531205.1/fasta/hub_GCF_024531205.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              31
Total size of examined sequences (bp):           4986756
Total number of identified SSRs:                 16
Number of SSR containing sequences:              9
Number of sequences containing more than 1 SSR:  4
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	1
3	1
5	4
6	10

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	total
GT	-	-	-	1															1
CTG	-	-	1																1
ACCAA				1															1
CAAAC	1																		1
CAAGG					1														1
TGCGC	1																		1
CCGCCA	1																		1
CCTAAA		1																	1
CTTTAC		1																	1
GCTGGA	1																		1
TAGTCA		1																	1
TCTACT	1																		1
TCTCTA		1																	1
TCTGCT									1										1
TCTGGC									1										1
TGTTGC																		1	1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	total
AC/GT	-	-	-	1															1
AGC/CTG	-	-	1																1
AAACC/GGTTT	1			1															2
AAGGC/CCTTG					1														1
AGCGC/CGCTG	1																		1
AAACCT/AGGTTT		1																	1
AAAGGT/ACCTTT		1																	1
AACAGC/CTGTTG																		1	1
AAGCAG/CTGCTT									1										1
AAGTAG/ACTTCT	1																		1
ACCGCC/CGGTGG	1																		1
ACTATG/AGTCAT		1																	1
AGAGAT/ATCTCT		1																	1
AGAGCC/CTCTGG									1										1
AGCTCC/AGCTGG	1																		1
