Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-56/megassr/results/hub_GCF_024531195.1/fasta/hub_GCF_024531195.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              41
Total size of examined sequences (bp):           5096293
Total number of identified SSRs:                 12
Number of SSR containing sequences:              8
Number of sequences containing more than 1 SSR:  4
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	1
3	1
5	3
6	7

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	total
GT	-	-	-	1									1
CTG	-	-	1										1
TACCT	1												1
TATAA	1												1
TGCGC	1												1
ATACCG					1								1
GTTGCT	1												1
TCTACT	1												1
TCTCTA								1					1
TCTGCT							1						1
TCTGGC												1	1
TTCTGG					1								1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	total
AC/GT	-	-	-	1									1
AGC/CTG	-	-	1										1
AAGGT/ACCTT	1												1
AATAT/ATATT	1												1
AGCGC/CGCTG	1												1
AACAGC/CTGTTG	1												1
AACCAG/CTGGTT					1								1
AAGCAG/CTGCTT							1						1
AAGTAG/ACTTCT	1												1
ACCGAT/ATCGGT					1								1
AGAGAT/ATCTCT								1					1
AGAGCC/CTCTGG												1	1
