Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-60/megassr/results/hub_GCF_024531155.1/fasta/hub_GCF_024531155.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              21
Total size of examined sequences (bp):           4986601
Total number of identified SSRs:                 16
Number of SSR containing sequences:              8
Number of sequences containing more than 1 SSR:  4
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	3
3	2
5	4
6	7

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	total
AC	-	-	-	1								1
GC	-	-	-	1	1							2
CTG	-	-	1									1
GCA	-	-	1									1
GCGAG	1											1
GCGCA	1											1
TTGAG	1											1
TTGCC	1											1
ACCGCG	1											1
CATAAG		1										1
CTGCAG		1										1
GGTGGC	1											1
TCTCTA										1		1
TCTGCT					1							1
TCTGGC											1	1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	total
AC/GT	-	-	-	1								1
CG/CG	-	-	-	1	1							2
AGC/CTG	-	-	2									2
AACTC/AGTTG	1											1
AAGGC/CCTTG	1											1
AGCGC/CGCTG	1											1
AGGCG/CCTCG	1											1
AAGCAG/CTGCTT					1							1
AAGCAT/ATGCTT		1										1
ACCGCC/CGGTGG	1											1
ACCGCG/CGCGGT	1											1
AGAGAT/ATCTCT										1		1
AGAGCC/CTCTGG											1	1
AGCTGC/AGCTGC		1										1
