Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-59/megassr/results/hub_GCF_024531135.1/fasta/hub_GCF_024531135.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              33
Total size of examined sequences (bp):           5057945
Total number of identified SSRs:                 15
Number of SSR containing sequences:              8
Number of sequences containing more than 1 SSR:  4
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	3
3	3
5	2
6	7

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	total
GC	-	-	-	1	1							2
GT	-	-	-	1								1
ACC	-	-			1							1
CTG	-	-	1									1
GCA	-	-	1									1
AAACA	1											1
AGGCG	1											1
ACCGCG	1											1
CAAGCA	1											1
CCTGAG			1									1
CTGAAG		1										1
CTTCTG											1	1
TAGATT					1							1
TCTCTA				1								1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	total
AC/GT	-	-	-	1								1
CG/CG	-	-	-	1	1							2
ACC/GGT	-	-			1							1
AGC/CTG	-	-	2									2
AAAAC/GTTTT	1											1
AGGCG/CCTCG	1											1
AAATCT/AGATTT					1							1
AAGCAC/CTTGTG	1											1
AAGCAG/CTGCTT											1	1
AAGCTG/AGCTTC		1										1
ACCGCG/CGCGGT	1											1
AGAGAT/ATCTCT				1								1
AGCCTG/AGGCTC			1									1
