Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-58/megassr/results/hub_GCF_024531115.1/fasta/hub_GCF_024531115.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              48
Total size of examined sequences (bp):           5682451
Total number of identified SSRs:                 14
Number of SSR containing sequences:              9
Number of sequences containing more than 1 SSR:  3
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	1
5	2
6	11

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	total
AC	-	-	-	1						1
AAAAT	1									1
GCTTG	1									1
AACCAG	1									1
ATAGAG	1									1
CTTCTG						1				1
CTTTGA		1								1
GAAGTA	1									1
GAATCT									1	1
GTCATG	1									1
TCGTGC	1									1
TCTAGC			1							1
TGTTTA				1						1
TTTTCA	1									1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	total
AC/GT	-	-	-	1						1
AAAAT/ATTTT	1									1
AAGCC/CTTGG	1									1
AAAATG/ATTTTC	1									1
AAACAT/ATGTTT				1						1
AAAGTC/ACTTTG		1								1
AACCAG/CTGGTT	1									1
AAGCAG/CTGCTT						1				1
AAGTAG/ACTTCT	1									1
AATCTG/AGATTC									1	1
ACCATG/ATGGTC	1									1
ACGAGC/CGTGCT	1									1
AGAGAT/ATCTCT	1									1
AGAGCT/AGCTCT			1							1
