Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-57/megassr/results/hub_GCF_024530995.1/fasta/hub_GCF_024530995.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              25
Total size of examined sequences (bp):           5561594
Total number of identified SSRs:                 14
Number of SSR containing sequences:              9
Number of sequences containing more than 1 SSR:  3
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	1
3	2
5	2
6	9

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	total
AC	-	-	-	1											1
GCA	-	-	1												1
GGC	-	-		1											1
CATTC	1														1
TGACT	1														1
AGCACG	1														1
ATCTCT			1												1
CAGAGC														1	1
CCACGA					1										1
CTTCTG									1						1
GAATCT						1									1
TCTACT	1														1
TGAACC	1														1
TTTTCA		1													1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	total
AC/GT	-	-	-	1											1
AGC/CTG	-	-	1												1
CCG/CGG	-	-		1											1
AAGTC/ACTTG	1														1
AATGG/ATTCC	1														1
AAAATG/ATTTTC		1													1
AACCTG/AGGTTC	1														1
AAGCAG/CTGCTT									1						1
AAGTAG/ACTTCT	1														1
AATCTG/AGATTC						1									1
ACCACG/CGTGGT					1										1
ACGAGC/CGTGCT	1														1
AGAGAT/ATCTCT			1												1
AGAGCC/CTCTGG														1	1
