Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-66/megassr/results/hub_GCF_024106375.1/fasta/hub_GCF_024106375.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              23
Total size of examined sequences (bp):           5901107
Total number of identified SSRs:                 26
Number of SSR containing sequences:              11
Number of sequences containing more than 1 SSR:  5
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	2
3	1
4	1
5	6
6	16

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	total
GC	-	-	-	1					1
GT	-	-	-	1					1
ACG	-	-	1						1
AGTC	-	1							1
CCCTT	1								1
CGCCG	1								1
CGGCG	1								1
GCCGC	1								1
TGCCC	1								1
TGCGC	1								1
CACGAT	1								1
CAGCGC	1								1
CAGGCC	1								1
CAGTGC	1								1
CTGGCC	1								1
GCAAGA						1			1
GCCAGG	1								1
GCCGTA	1								1
GCGGTG	1								1
GCTCTG	1								1
GCTCTT	1					1		1	3
GGCCAT	1								1
GGGCCT	1								1
TGCTGG	1								1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	total
AC/GT	-	-	-	1					1
CG/CG	-	-	-	1					1
ACG/CGT	-	-	1						1
ACTG/AGTC	-	1							1
AAGGG/CCCTT	1								1
AGCGC/CGCTG	1								1
AGGGC/CCCTG	1								1
CCGCG/CGCGG	3								3
AAGAGC/CTCTTG	1					2		1	4
ACCAGC/CTGGTG	1								1
ACCGCC/CGGTGG	1								1
ACGATC/ATCGTG	1								1
ACGGCT/AGCCGT	1								1
ACTGGC/AGTGCC	1								1
AGAGCC/CTCTGG	1								1
AGCGCC/CGCTGG	1								1
AGGCCC/CCTGGG	2								2
AGGGCC/CCCTGG	2								2
ATGGCC/ATGGCC	1								1
