Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-65/megassr/results/hub_GCF_023956975.1/fasta/hub_GCF_023956975.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              50
Total size of examined sequences (bp):           2988550
Total number of identified SSRs:                 18
Number of SSR containing sequences:              9
Number of sequences containing more than 1 SSR:  4
Number of SSRs present in compound formation:    1


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	4
3	3
5	3
6	8

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	total
AT	-	-	-	1		1	2
TA	-	-	-		2		2
ATG	-	-	1				1
ATT	-	-	1				1
GTT	-	-	1				1
AATAA	2						2
GAAAA	1						1
AACACC	1						1
CGTGAT	1						1
GAAAAA	1						1
GCATCC	1						1
GCATCG	1						1
TCAGCA	2						2
TCGGCA	1						1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	total
AT/AT	-	-	-	1	2	1	4
AAC/GTT	-	-	1				1
AAT/ATT	-	-	1				1
ATC/ATG	-	-	1				1
AAAAG/CTTTT	1						1
AAAAT/ATTTT	2						2
AAAAAG/CTTTTT	1						1
AACACC/GGTGTT	1						1
ACGATC/ATCGTG	1						1
AGCATC/ATGCTG	2						2
ATCCGC/ATGCGG	1						1
ATCGGC/ATGCCG	2						2
