Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-62/megassr/results/hub_GCF_023956735.1/fasta/hub_GCF_023956735.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              35
Total size of examined sequences (bp):           2912962
Total number of identified SSRs:                 20
Number of SSR containing sequences:              9
Number of sequences containing more than 1 SSR:  3
Number of SSRs present in compound formation:    5


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	2
3	3
5	4
6	11

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	total
AG	-	-	-	1			1
AT	-	-	-			1	1
ATT	-	-	1				1
GTT	-	-	1				1
TCA	-	-	1				1
AATAA	2						2
GAAAA	1						1
TTTGA	1						1
CCTGGC	1						1
GAAAAA	1						1
GCATCA		1					1
GCATCG	4	1					5
TCAGCA	2						2
TCGGCA	1						1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	total
AG/CT	-	-	-	1			1
AT/AT	-	-	-			1	1
AAC/GTT	-	-	1				1
AAT/ATT	-	-	1				1
ATC/ATG	-	-	1				1
AAAAG/CTTTT	1						1
AAAAT/ATTTT	2						2
AAATC/ATTTG	1						1
AAAAAG/CTTTTT	1						1
AGCATC/ATGCTG	2	1					3
AGGGCC/CCCTGG	1						1
ATCGGC/ATGCCG	5	1					6
