Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-74/megassr/results/hub_GCF_023956715.1/fasta/hub_GCF_023956715.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              47
Total size of examined sequences (bp):           2790031
Total number of identified SSRs:                 9
Number of SSR containing sequences:              6
Number of sequences containing more than 1 SSR:  2
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
3	2
5	2
6	5

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	total
TCA	-	-	1													1
TTG	-	-			1											1
ATAAA	1															1
TATTT	1															1
CAAAAC															1	1
CTGATA	1															1
TGGTGT	1															1
TTTCTT	1															1
TTTTTC	1															1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	total
AAC/GTT	-	-			1											1
ATC/ATG	-	-	1													1
AAAAT/ATTTT	2															2
AAAAAG/CTTTTT	2															2
AAAACC/GGTTTT															1	1
AACACC/GGTGTT	1															1
ACTGAT/AGTATC	1															1
