Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-61/megassr/results/hub_GCF_023956365.1/fasta/hub_GCF_023956365.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              77
Total size of examined sequences (bp):           2648130
Total number of identified SSRs:                 11
Number of SSR containing sequences:              8
Number of sequences containing more than 1 SSR:  2
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
3	1
5	3
6	7

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	total
TCA	-	-	1	1
GAAAA	1			1
GAACA	1			1
TCTTG	1			1
AAAAAT	1			1
AAAGCA	1			1
GATGCC	1			1
GCCGTA	1			1
GTTGGT	1			1
TAGAGA	1			1
TGAATT	1			1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	total
ATC/ATG	-	-	1	1
AAAAG/CTTTT	1			1
AACAG/CTGTT	1			1
AAGAC/CTTGT	1			1
AAAAAT/ATTTTT	1			1
AAAAGC/CTTTTG	1			1
AAATTC/AATTTG	1			1
AACACC/GGTGTT	1			1
ACGGCT/AGCCGT	1			1
AGAGAT/ATCTCT	1			1
ATCGGC/ATGCCG	1			1
