Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-52/megassr/results/hub_GCF_023956075.1/fasta/hub_GCF_023956075.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              61
Total size of examined sequences (bp):           2944796
Total number of identified SSRs:                 8
Number of SSR containing sequences:              5
Number of sequences containing more than 1 SSR:  2
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
3	1
5	2
6	5

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	total
ATG	-	-	1									1
GTTTG	1											1
TTTAT	1											1
GGTTTT											1	1
TATATT	1											1
TGTTAA	1											1
TGTTGC	1											1
TTTTTC	1											1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	total
ATC/ATG	-	-	1									1
AAAAT/ATTTT	1											1
AAACC/GGTTT	1											1
AAAAAG/CTTTTT	1											1
AAAACC/GGTTTT											1	1
AAATAT/ATATTT	1											1
AACAGC/CTGTTG	1											1
AACATT/AATGTT	1											1
