Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-55/megassr/results/hub_GCF_023913315.1/fasta/hub_GCF_023913315.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              124
Total size of examined sequences (bp):           4345289
Total number of identified SSRs:                 32
Number of SSR containing sequences:              27
Number of sequences containing more than 1 SSR:  4
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	1
3	11
4	2
5	1
6	17

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	total
G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-		1	1
AGA	-	-	1																	1
CAG	-	-	1																	1
CCA	-	-	1																	1
CCG	-	-		1																1
CTG	-	-	2																	2
GCA	-	-		1																1
GCC	-	-	1																	1
GGC	-	-	1																	1
GGT	-	-	1																	1
TGC	-	-	1																	1
CCAG	-	1																		1
GGCT	-			1																1
GCTTG					1															1
AACAGC	1																			1
ACCCTG	1																			1
ATGGCC	1																			1
CATCGC	1																			1
CCAGGG	1																			1
CGCTGG	1																			1
CGGAGC				1																1
CTCGGC	1																			1
GACGAA				1																1
GCCAGC	1																			1
GCCGGT	1																			1
GCTCCG	1																			1
GCTGGC	1																			1
GTCATG	1																			1
GTGGCG	1																			1
TCAGCA	1																			1
TGCTGG	1																			1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	total
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-		1	1
AAG/CTT	-	-	1																	1
ACC/GGT	-	-	2																	2
AGC/CTG	-	-	4	1																5
CCG/CGG	-	-	2	1																3
AGCC/CTGG	-	1		1																2
AAGCC/CTTGG					1															1
AACAGC/CTGTTG	1																			1
AAGACG/CGTCTT				1																1
ACCAGC/CTGGTG	1																			1
ACCATG/ATGGTC	1																			1
ACCCTG/AGGGTC	1																			1
ACCGCC/CGGTGG	1																			1
ACCGGC/CCGGTG	1																			1
AGCATC/ATGCTG	1																			1
AGCCGG/CCGGCT	1			1																2
AGCGCC/CGCTGG	3																			3
AGGCCG/CCTCGG	1																			1
AGGGCC/CCCTGG	1																			1
ATCGCC/ATGGCG	1																			1
ATGGCC/ATGGCC	1																			1
