Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-54/megassr/results/hub_GCF_023821945.1/fasta/hub_GCF_023821945.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              116
Total size of examined sequences (bp):           5021484
Total number of identified SSRs:                 24
Number of SSR containing sequences:              18
Number of sequences containing more than 1 SSR:  5
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	6
3	9
4	2
5	2
6	5

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	total
CG	-	-	-	3	1															4
GC	-	-	-	1																1
TA	-	-	-	1																1
CCG	-	-	3																	3
CGT	-	-		1																1
GCA	-	-	1																	1
GCC	-	-	1																	1
GGC	-	-	1																	1
TCA	-	-	1																	1
TGA	-	-	1																	1
ACTT	-																		1	1
ATTT	-	1																		1
AGAGA		1																		1
CAGCG	1																			1
CGCCAG	1																			1
CTTCTG	1																			1
GAAGTC	1																			1
GCTGGC	1																			1
GTTGAA	1																			1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	total
AT/AT	-	-	-	1																1
CG/CG	-	-	-	4	1															5
ACG/CGT	-	-		1																1
AGC/CTG	-	-	1																	1
ATC/ATG	-	-	2																	2
CCG/CGG	-	-	5																	5
AAAT/ATTT	-	1																		1
AAGT/ACTT	-																		1	1
AAGAG/CTCTT		1																		1
AGCGC/CGCTG	1																			1
AACTTC/AAGTTG	1																			1
AAGCAG/CTGCTT	1																			1
AAGTCG/ACTTCG	1																			1
AGCGCC/CGCTGG	2																			2
