Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-54/megassr/results/hub_GCF_023703065.1/fasta/hub_GCF_023703065.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              56
Total size of examined sequences (bp):           4959744
Total number of identified SSRs:                 73
Number of SSR containing sequences:              34
Number of sequences containing more than 1 SSR:  19
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	14
3	28
5	16
6	15

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	total
CG	-	-	-	5			5
GC	-	-	-	6	1	2	9
CAG	-	-	3				3
CCA	-	-		1			1
CCG	-	-	3	1			4
CGC	-	-	3				3
CGG	-	-	4				4
CTG	-	-	3				3
GAA	-	-	1				1
GCC	-	-	2	1			3
GCG	-	-	3				3
GGC	-	-	1				1
GGT	-	-	1				1
TGC	-	-	1				1
AAAAT	1						1
ATTTT	1						1
CGCCG	1						1
CGCGC	1						1
CGGCG	1						1
GCCGC	1						1
GCGCC	2						2
GCGCT	1						1
GCGGC	1						1
GCGGG	1						1
GCTGC	1						1
GGCGC	2						2
TAATT	1						1
TGTTT	1						1
AAAACC	1						1
CAACAG	2						2
CAGGCG	1						1
CCGGCA	1						1
CGGCAC	1						1
CGTTGC	1						1
CTGGCG	2						2
GCATCG	1						1
GCCGGT	1						1
GCGGTG	1						1
GCTGGC	1						1
GTAATT	1						1
TCGCCG	1						1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	total
CG/CG	-	-	-	11	1	2	14
AAG/CTT	-	-	1				1
ACC/GGT	-	-	1	1			2
AGC/CTG	-	-	7				7
CCG/CGG	-	-	16	2			18
AAAAC/GTTTT	1						1
AAAAT/ATTTT	2						2
AAATT/AATTT	1						1
AGCGC/CGCTG	2						2
CCCCG/CGGGG	1						1
CCGCG/CGCGG	9						9
AAAACC/GGTTTT	1						1
AACAGC/CTGTTG	2						2
AACGGC/CCGTTG	1						1
AATTAC/AATTGT	1						1
ACCGCC/CGGTGG	1						1
ACCGGC/CCGGTG	3						3
ACGGCG/CCGTCG	1						1
AGCGCC/CGCTGG	3						3
AGGCGC/CCTGCG	1						1
ATCGGC/ATGCCG	1						1
