Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-53/megassr/results/hub_GCF_023383095.1/fasta/hub_GCF_023383095.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              52
Total size of examined sequences (bp):           7460271
Total number of identified SSRs:                 126
Number of SSR containing sequences:              36
Number of sequences containing more than 1 SSR:  22
Number of SSRs present in compound formation:    1


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	33
3	17
4	2
5	33
6	41

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	total
CG	-	-	-	18				18
GC	-	-	-	15				15
CAC	-	-	1					1
CAG	-	-	1					1
CCG	-	-		1				1
CGC	-	-	4					4
CGG	-	-	3	2				5
CTG	-	-	1					1
GCG	-	-		1				1
GGC	-	-	1					1
TCG	-	-	1					1
TGA	-	-	1					1
CGAG	-	1						1
GCGG	-	1						1
ACCGC	1							1
CCCGC	1							1
CCGCG	2							2
CGCCG	4							4
CGCGC	4							4
CGCGG	1							1
CGCGT	2							2
CGGCC	1							1
CGGCG	2							2
GCGAG	1							1
GCGCC	2							2
GCGCG	7							7
GCGGC	1							1
GGCGC	1							1
GGGCG	1							1
TCATT	1							1
TCGAT	1							1
ACGGCG	1							1
AGTCGA	1							1
CACCGT		1						1
CACGAT	1							1
CAGCGC	1							1
CATCGA	1							1
CCACCG	1							1
CCGCCA	1							1
CCGTCG		1						1
CGCAGC	1							1
CGCATC	1							1
CGCGCA	1							1
CGGCTC	1							1
CGTCGA	1							1
CGTGGT		1						1
GCACCG	1							1
GCACGC	1							1
GCACGT	1							1
GCCGAG	1							1
GCCGAT	1							1
GCCGGC	1							1
GCGCCG	1							1
GCGGCC	1							1
GCGGCT	1							1
GGCACT							1	1
GGCCGG		1						1
GGCGCG	2							2
GGTCGA	7							7
GTCGAG	1							1
GTTGGC			1					1
TCGAAC	1							1
TCGACC	1							1
TCGACT	1							1
TTGCCG	1							1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	total
CG/CG	-	-	-	33				33
ACC/GGT	-	-	1					1
ACG/CGT	-	-	1					1
AGC/CTG	-	-	2					2
ATC/ATG	-	-	1					1
CCG/CGG	-	-	8	4				12
AGCG/CGCT	-	1						1
CCCG/CGGG	-	1						1
AAATG/ATTTC	1							1
AATCG/ATTCG	1							1
ACCGC/CGGTG	1							1
ACGCG/CGCGT	2							2
AGGCG/CCTCG	1							1
CCCCG/CGGGG	2							2
CCCGG/CCGGG	1							1
CCGCG/CGCGG	24							24
AACGCC/CGTTGG			1					1
AACGGC/CCGTTG	1							1
AACTCG/AGTTCG	1							1
AAGTCG/ACTTCG	2							2
ACATCG/ATGTCG	1							1
ACCACG/CGTGGT		1						1
ACCGCC/CGGTGG	2							2
ACCGGC/CCGGTG	1							1
ACCGTC/ACGGTG		1						1
ACCTCG/AGGTCG	9							9
ACGATC/ATCGTG	1							1
ACGCGC/CGCGTG	2							2
ACGGCG/CCGTCG	1	1						2
ACGTCG/ACGTCG	1							1
ACGTGC/ACGTGC	1							1
ACTGGC/AGTGCC							1	1
AGCCGC/CGGCTG	2							2
AGCCGG/CCGGCT	1							1
AGCGCC/CGCTGG	1							1
AGGCCG/CCTCGG	1							1
ATCCGC/ATGCGG	1							1
ATCGGC/ATGCCG	1							1
CCCCGG/CCGGGG		1						1
CCCGCG/CGCGGG	2							2
CCGCGG/CCGCGG	1							1
CCGGCG/CCGGCG	2							2
