Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-48/megassr/results/hub_GCF_023195465.1/fasta/hub_GCF_023195465.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              93
Total size of examined sequences (bp):           960401
Total number of identified SSRs:                 26
Number of SSR containing sequences:              20
Number of sequences containing more than 1 SSR:  4
Number of SSRs present in compound formation:    2


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	4
2	9
3	2
5	7
6	4

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	total
A	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-																																																		1	1
T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-						1						1	1																																						3
TA	-	-	-			1	2	5	1																																																											9
ATT	-	-		2																																																																2
AAATA	1																																																																			1
AAGAA	1																																																																			1
ATAAT	1																																																																			1
ATATT	1																																																																			1
CTTTT	1																																																																			1
TTTTA	1																																																																			1
TTTTG	1																																																																			1
AAGAAA	1																																																																			1
TAAAAG	1																																																																			1
TAAATC	1																																																																			1
TTTAAG	1																																																																			1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	total
A/T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-						1						1	1																																					1	4
AT/AT	-	-	-			1	2	5	1																																																											9
AAT/ATT	-	-		2																																																																2
AAAAC/GTTTT	1																																																																			1
AAAAG/CTTTT	2																																																																			2
AAAAT/ATTTT	2																																																																			2
AATAT/ATATT	2																																																																			2
AAAAAG/CTTTTT	1																																																																			1
AAAAGT/ACTTTT	1																																																																			1
AAACTT/AAGTTT	1																																																																			1
AAATCT/AGATTT	1																																																																			1
