Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-67/megassr/results/hub_GCF_023195435.1/fasta/hub_GCF_023195435.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              2
Total size of examined sequences (bp):           6333433
Total number of identified SSRs:                 32
Number of SSR containing sequences:              1
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    2


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	6
3	1
4	1
5	10
6	14

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	total
CG	-	-	-	4	1	5
GC	-	-	-	1		1
CCG	-	-		1		1
GTCA	-		1			1
ACCCG	1					1
CCCGA		1				1
CGCGC	1					1
GCCGA	1					1
GCCGC	1					1
GCCTT	1					1
GGCGA	1					1
GGCGC	1					1
TCGCG	1					1
TGATC	1					1
ACCTGC	1					1
CAGCGC	1					1
CAGGCC	1					1
CCGCCA	2					2
CGGTGC	1					1
CTGCAC		1				1
GCCCGA	1					1
GGCGAA	1					1
TCTTGA		1				1
TGCTGT	1					1
TGGCGG	1					1
TTCGGC	1					1
TTGATC	1					1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	total
CG/CG	-	-	-	5	1	6
CCG/CGG	-	-		1		1
ACTG/AGTC	-		1			1
AAGGC/CCTTG	1					1
ACCCG/CGGGT	1	1				2
ACGCG/CGCGT	1					1
AGATC/ATCTG	1					1
AGCCG/CGGCT	1					1
AGGCG/CCTCG	1					1
CCGCG/CGCGG	3					3
AACAGC/CTGTTG	1					1
AAGATC/ATCTTG	1	1				2
AAGCCG/CGGCTT	1					1
AAGGCG/CCTTCG	1					1
ACCGCC/CGGTGG	3					3
ACCGGC/CCGGTG	1					1
ACCTGC/AGGTGC	1	1				2
AGCCCG/CGGGCT	1					1
AGCGCC/CGCTGG	1					1
AGGCCC/CCTGGG	1					1
