Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-66/megassr/results/hub_GCF_023098285.1/fasta/hub_GCF_023098285.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              5
Total size of examined sequences (bp):           6436352
Total number of identified SSRs:                 30
Number of SSR containing sequences:              1
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    2


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	4
3	1
4	1
5	10
6	14

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	total
CG	-	-	-	3	3
GC	-	-	-	1	1
CCG	-	-		1	1
GTCA	-		1		1
ACCCG	1				1
CCCGA		1			1
CGCGC	1				1
GCCGA	1				1
GCCGC	1				1
GCCTT	1				1
GGCGA	1				1
GGCGC	1				1
TCGCG	1				1
TGATC	1				1
ACCTGC	1				1
CAGCGC	1				1
CAGGCC	1				1
CCGCCA	2				2
CGGTGC	1				1
CTGCAC		1			1
GCCCGA	1				1
GGCGAA	1				1
TCTTGA		1			1
TGCTGT	1				1
TGGCGG	1				1
TTCGGC	1				1
TTGATC	1				1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	total
CG/CG	-	-	-	4	4
CCG/CGG	-	-		1	1
ACTG/AGTC	-		1		1
AAGGC/CCTTG	1				1
ACCCG/CGGGT	1	1			2
ACGCG/CGCGT	1				1
AGATC/ATCTG	1				1
AGCCG/CGGCT	1				1
AGGCG/CCTCG	1				1
CCGCG/CGCGG	3				3
AACAGC/CTGTTG	1				1
AAGATC/ATCTTG	1	1			2
AAGCCG/CGGCTT	1				1
AAGGCG/CCTTCG	1				1
ACCGCC/CGGTGG	3				3
ACCGGC/CCGGTG	1				1
ACCTGC/AGGTGC	1	1			2
AGCCCG/CGGGCT	1				1
AGCGCC/CGCTGG	1				1
AGGCCC/CCTGGG	1				1
