Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-52/megassr/results/hub_GCF_022833055.1/fasta/hub_GCF_022833055.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              1
Total size of examined sequences (bp):           1484125
Total number of identified SSRs:                 28
Number of SSR containing sequences:              1
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	2
2	9
3	4
5	8
6	5

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	total
A	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-				1						1	2
AT	-	-	-	5																								5
TA	-	-	-	4																								4
ATT	-	-	1																									1
CAC	-	-	1																									1
TAA	-	-	1																									1
TAC	-	-	1																									1
AACAT	1																											1
ACATA	1																											1
ACATC	1																											1
ATATT	1																											1
TAGTA	1																											1
TATAA	1																											1
TGTGT	1																											1
TTTTA	1																											1
AAAACA	1																											1
ATGTAT				1																								1
CATTAT	1																											1
TTATCC	1																											1
TTGTAG					1																							1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	total
A/T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-				1						1	2
AT/AT	-	-	-	9																								9
AAT/ATT	-	-	2																									2
ACC/GGT	-	-	1																									1
ACT/AGT	-	-	1																									1
AAAAT/ATTTT	1																											1
AACAC/GTGTT	1																											1
AACAT/ATGTT	2																											2
AATAT/ATATT	2																											2
ACATC/ATGTG	1																											1
ACTAT/AGTAT	1																											1
AAAAAC/GTTTTT	1																											1
AACTAC/AGTTGT					1																							1
AAGGAT/ATCCTT	1																											1
AATGAT/ATCATT	1																											1
ACATAT/ATATGT				1																								1
