Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-94/megassr/results/hub_GCF_022814805.1/fasta/hub_GCF_022814805.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              1
Total size of examined sequences (bp):           1503745
Total number of identified SSRs:                 34
Number of SSR containing sequences:              1
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	2
2	9
3	3
4	5
5	9
6	6

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	total
A	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-																		1	1
T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-		1																	1
AT	-	-	-	3		1	1																													5
TA	-	-	-	4																																4
ATA	-	-					1																													1
CAC	-	-	1																																	1
TCA	-	-	1																																	1
AATA	-	2																																		2
ATTA	-	1																																		1
TAAT	-	1																																		1
TTAA	-	1																																		1
AACAT	1																																			1
ACATA	1																																			1
ACATC	1																																			1
ATATA	1																																			1
ATATT	1																																			1
TAATA	1																																			1
TATAT	1																																			1
TGTGT	1																																			1
TTTTA	1																																			1
AAAACA	1																																			1
ACCACA	1																																			1
ACCATA		1																																		1
CTGAAT	1																																			1
TCTTTA	1																																			1
TTCATC			1																																	1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	total
A/T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-		1																1	2
AT/AT	-	-	-	7		1	1																													9
AAT/ATT	-	-					1																													1
ACC/GGT	-	-	1																																	1
ATC/ATG	-	-	1																																	1
AAAT/ATTT	-	2																																		2
AATT/AATT	-	3																																		3
AAAAT/ATTTT	1																																			1
AACAC/GTGTT	1																																			1
AACAT/ATGTT	2																																			2
AATAT/ATATT	4																																			4
ACATC/ATGTG	1																																			1
AAAAAC/GTTTTT	1																																			1
AAAGAT/ATCTTT	1																																			1
AACCAC/GGTTGT	1																																			1
AACCAT/ATGGTT		1																																		1
AAGATG/ATCTTC			1																																	1
AATCTG/AGATTC	1																																			1
