Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-53/megassr/results/hub_GCF_022699445.1/fasta/hub_GCF_022699445.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              1
Total size of examined sequences (bp):           4840834
Total number of identified SSRs:                 94
Number of SSR containing sequences:              1
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    29


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	6
3	3
5	7
6	78

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	total
CG	-	-	-	3																				3
GC	-	-	-	2	1																			3
GGT	-	-	3																					3
CGCAC	1																							1
CTGCC	1																							1
CTGGC	1																							1
GACCG	1																							1
GCCGC	1																							1
GCGGC	1																							1
GGCAA	1																							1
AACAGC						1																		1
AACTTC	1		1																					2
AAGAGC						1																		1
AAGATC					1	2	1											1						5
AGAGCA			1																					1
AGCAAC						1	1						1											3
AGCAAG		1	1																				1	3
CAAAAG	1																							1
CAAGAG				2					1															3
CAAGAT	2			1				1																4
CAAGGT	1																							1
CAGCAA	1																							1
CAGGAA	1																							1
CAGTTG	1																							1
CCAGGG	1																							1
CCATGG	1																							1
CCGTTG			1																					1
CGACGT	1																							1
CGTGAC	1																							1
CTGCAC			1																					1
CTTGAT	1				1																			2
CTTGCT		2																						2
CTTGGA	1																							1
GATCTT							1			1														2
GCAACG								1									1							2
GCAACT												1												1
GCCCTT				1																				1
GCTCTG			1																					1
GCTCTT		1																						1
GGCACT	1																							1
GGCCTG	1																							1
GGCGCT	1																							1
GGGCAA	1																							1
GGTGCA	1	1																						2
GTTGCA						1																		1
TACGGC	1																							1
TCAAGA		1													1									2
TCAAGG	2																							2
TCTTGA						1									1									2
TCTTGC				1																				1
TGATCT		1																						1
TGATGC											1													1
TGCAGT		1																						1
TGCCAT		1																						1
TGCCCT		1																						1
TGCCGT															1									1
TGCTCT			1																					1
TGCTGT									1													1		2
TGGCTT	1																							1
TTGATC			1						1			1												3
TTGCAG						1																		1
TTGCTC	1														1									2

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	total
CG/CG	-	-	-	5	1																			6
ACC/GGT	-	-	3																					3
AAGGC/CCTTG	1																							1
ACCGC/CGGTG	1																							1
ACCGG/CCGGT	1																							1
AGGCC/CCTGG	1																							1
AGGGC/CCCTG	1																							1
CCGCG/CGCGG	2																							2
AAAAGC/CTTTTG	1																							1
AAAGCC/CTTTGG	1																							1
AACAGC/CTGTTG	1					2	1		1				1									1		7
AACAGG/CCTGTT	1																							1
AACGGC/CCGTTG			1					1							1		1							4
AACTGC/AGTTGC	1	1				2						1												5
AACTTC/AAGTTG	1		1																					2
AAGAGC/CTCTTG	1	4	3	3		1			1						1								1	15
AAGATC/ATCTTG	3	2	1	1	2	3	2	1	1	1		1			2			1						21
AAGGGC/CCCTTG	1	1		1																				3
AAGGTC/ACCTTG	3																							3
AAGTCC/ACTTGG	1																							1
AATGGC/ATTGCC		1																						1
ACCGTG/ACGGTC	1																							1
ACCTGC/AGGTGC	1	1	1																					3
ACGGCT/AGCCGT	1																							1
ACGTCG/ACGTCG	1																							1
ACTGGC/AGTGCC	1																							1
AGAGCC/CTCTGG			1																					1
AGCATC/ATGCTG											1													1
AGCGCC/CGCTGG	1																							1
AGGCCC/CCTGGG	1																							1
AGGGCC/CCCTGG	1																							1
ATGGCC/ATGGCC	1																							1
