Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-51/megassr/results/hub_GCF_022669095.1/fasta/hub_GCF_022669095.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              3
Total size of examined sequences (bp):           4718120
Total number of identified SSRs:                 36
Number of SSR containing sequences:              3
Number of sequences containing more than 1 SSR:  3
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	11
3	11
5	4
6	10

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	total
CG	-	-	-	6		6
GC	-	-	-	4	1	5
CAG	-	-	2			2
CCG	-	-	2			2
CGC	-	-	2			2
CTG	-	-	1			1
GCG	-	-	1	1		2
GCT	-	-	2			2
AAAAT	1					1
CGCGC	1					1
GCGTG	1					1
GGCGC	1					1
AAACCG	1					1
ACCTTC	1					1
CGACTT	1					1
CGCCAG	1					1
CGCTGG	2					2
GCGCCA	1					1
GGCGGT	1					1
GTCGCC	1					1
TGCTGG		1				1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	total
CG/CG	-	-	-	10	1	11
AGC/CTG	-	-	5			5
CCG/CGG	-	-	5	1		6
AAAAT/ATTTT	1					1
ACGCC/CGTGG	1					1
CCGCG/CGCGG	2					2
AAACCG/CGGTTT	1					1
AAGGTG/ACCTTC	1					1
AAGTCG/ACTTCG	1					1
ACCAGC/CTGGTG		1				1
ACCGCC/CGGTGG	1					1
ACGGCG/CCGTCG	1					1
AGCGCC/CGCTGG	4					4
